The New York Times Manga Best Sellers of 2013
This is a list of manga that topped The New York Times Manga Best Seller list in 2013.
| Date | Book | Author | Publisher |
| January 6 | Maximum Ride, Vol. 6 | James Patterson | Yen Press |
| January 13 | Maximum Ride, Vol. 6 | James Patterson | Yen Press |
| January 20 | Maximum Ride, Vol. 6 | James Patterson | Yen Press |
| January 27 | Bleach, Vol. 54 | Tite Kubo | Viz Media |
| February 3 | Missions of Love, Vol. 2 | Ema Toyama | Kodansha Comics |
| February 10 | Black Butler, Vol. 12 | Yana Toboso | Yen Press |
| February 17 | Sailor Moon, Vol. 9 | Naoko Takeuchi | Kodansha Comics |
| February 24 | Naruto, Vol. 60 | Masashi Kishimoto | Viz Media |
| March 3 | Skip Beat, Vol. 30 | Yoshiki Nakamura | Viz Media |
| March 10 | Naruto, Vol. 60 | Masashi Kishimoto | Viz Media |
| March 17 | , Vol. 17 | Yukito Kishiro | Kodansha Comics |
| March 24 | Rosario+Vampire Season II, Vol. 11 | Akihisa Ikeda | Viz Media |
| March 31 | One Piece, Vol. 66 | Eiichiro Oda | Viz Media |
| April 7 | Yu-Gi-Oh! Zexal, Vol. 2 | Kazuki Takahashi | Viz Media |
| April 14 | Sailor Moon, Vol. 10 | Naoko Takeuchi | Kodansha Comics |
| April 21 | Sailor Moon, Vol. 10 | Naoko Takeuchi | Kodansha Comics |
| April 28 | Bleach, Vol. 56 | Tite Kubo | Viz Media |
| May 5 | Bleach, Vol. 56 | Tite Kubo | Viz Media |
| May 12 | Black Butler, Vol. 13 | Yana Toboso | Yen Press |
| May 19 | Negima Magister Negi Magi, Vol. 38 | Ken Akamatsu | Kodansha Comics |
| May 26 | Naruto, Vol. 61 | Masashi Kishimoto | Viz Media |
| June 2 | Naruto, Vol. 61 | Masashi Kishimoto | Viz Media |
| June 9 | Sailor Moon, Vol. 11 | Naoko Takeuchi | Kodansha Comics |
| June 16 | Sailor Moon, Vol. 11 | Naoko Takeuchi | Kodansha Comics |
| June 23 | Yu-Gi-Oh! Zexal, Vol. 3 | Kazuki Takahashi | Viz Media |
| June 30 | Yu-Gi-Oh! Zexal, Vol. 3 | Kazuki Takahashi | Viz Media |
| July 7 | One Piece, Vol. 67 | Eiichiro Oda | Viz Media |
| July 14 | , Vol. 2 | Yoshikazu Yasuhiko | Vertical |
| July 21 | Bleach, Vol. 57 | Tite Kubo | Viz Media |
| July 28 | Blue Exorcist, Vol. 10 | Kazue Kato | Viz Media |
| August 4 | Sailor Moon, Vol. 12 | Naoko Takeuchi | Kodansha Comics |
| August 11 | Sailor Moon, Vol. 12 | Naoko Takeuchi | Kodansha Comics |
| August 18 | Black Butler, Vol. 14 | Yana Toboso | Yen Press |
| August 25 | Naruto, Vol. 62 | Masashi Kishimoto | Viz Media |
| September 1 | Naruto, Vol. 62 | Masashi Kishimoto | Viz Media |
| September 8 | Naruto, Vol. 62 | Masashi Kishimoto | Viz Media |
| September 15 | Naruto, Vol. 62 | Masashi Kishimoto | Viz Media |
| September 22 | One Piece, Vol. 68 | Eiichiro Oda | Viz Media |
| September 29 | Sailor Moon Short Stories, Vol. 1 | Naoko Takeuchi | Kodansha Comics |
| October 6 | Sailor Moon Short Stories, Vol. 1 | Naoko Takeuchi | Kodansha Comics |
| October 13 | , Vol. 3 | Yoshikazu Yasuhiko | Vertical |
| October 20 | Bleach, Vol. 58 | Tite Kubo | Viz Media |
| October 27 | Attack on Titan, Vol. 1 | Hajime Isayama | Kodansha Comics |
| November 3 | Monster Musume, Vol. 1 | Okayado | Seven Seas Entertainment |
| November 10 | Monster Musume, Vol. 1 | Okayado | Seven Seas Entertainment |
| November 17 | Black Butler, Vol. 15 | Yana Toboso | Yen Press |
| November 24 | Yu-Gi-Oh! 5D's, Vol. 5 | Masahiro Hikokubo | Viz Media |
| December 1 | Yu-Gi-Oh! 5D's, Vol. 5 | Masahiro Hikokubo | Viz Media |
| December 8 | Yotsuba&!, Vol. 12 | Kiyohiko Azuma | Yen Press |
| December 15 | Sailor Moon Short Stories, Vol. 2 | Naoko Takeuchi | Kodansha Comics |
| December 22 | One Piece, Vol. 69 | Eiichiro Oda | Viz Media |
| December 29 | One Piece, Vol. 69 | Eiichiro Oda | Viz Media |