Hong's research focuses on elucidating the structure, dynamics and mechanism of membrane proteins using ssNMR. She is particularly known for her in-depth study of the Matrix-2 proteins of influenza A viruses, which are responsible for all flu pandemics in history. M2 is an acid-activated proton channel and a membrane scission protein of the influenza virus. Hong's ssNMR studies have provided insights into the proton-conduction mechanism of this channel, by quantifying the proton transfer rates and equilibria between water and the proton-selective histidine residue. She showed that the antiviral drug amantadine inhibits proton conduction by direct occlusion of the channel pore. She determined the cholesterol-binding structure of the M2 protein, which sheds light on how cholesterol mediates M2's membrane scission function. In 2020 she determined the first phospholipid-bound structures of the influenza B M2 protein in both its closed and open states. The 1.5 Å structures gave insight into differences in the activation mechanism of BM2 compared to AM2. Other membrane proteins that Hong's group has studied include β-hairpinantimicrobial peptides, channel-forming colicins, and viral fusion proteins. She determined the structure of the membrane toroidal pores formed by the antimicrobial peptide protegrin-1, which explained the membrane-disruptive mechanism of this peptide. She showed that the transmembrane domain of viral fusion proteins can be conformationally plastic, and the β-sheet conformation can correlate with the generation of membrane curvature and membrane dehydration, which are necessary for virus-cell fusion. Hong has also investigated the structure and dynamics of amyloid proteins, including full-length tau and Aβ peptides involved in neurodegenerative diseases as well as amyloid fibrils formed by designed peptides. She showed that the peptide hormone glucagon fibrillizes into an antiparallel hydrogen-bonded β-sheet with two coexisting molecular conformations. These studies shed light on the origin of structural polymorphism, water interaction, and metal ion binding. Hong has pioneered the study of plant cell walls using multidimensional ssNMR. These studies revealed the molecular interactions of the polysaccharides in plant cell walls, and helped to revise the conventional model of the primary cell wall structure by proposing a single-network model where cellulose, hemicellulose and pectins all interact with each other. She determined the binding target of the protein expansin to be hemicellulose-enriched regions of cellulose microfibrils, thus giving insight into the mechanism of wall loosening by expansin. To address these questions, Hong has developed isotopic labeling strategies, multidimensional NMR correlation experiments, polarization transfer techniques, and computational methods for resonance assignment of NMR spectra.
