Dagan was active in actions of civil disobedience as a method of protesting the Disengagement Plan. Dagan helped to organize the 2007 Yom Ha'atzmaut march to Homesh. During Sukkot of the same year, Dagan organized a pilgrimage to Homesh. Many former residents and sympathetic Israelis camped out on the grounds where Homesh houses were demolished. The Christian Science Monitor quoted Dagan as warning against the disengagement: "You'll be creating a terror state that would threaten most of the country with Qassam ." In 2013, Dagan helped to spearhead a public relations campaign focused on welcoming Israelis to the West Bank. Dagan hoped to counter what he said were "radical left-wing Israeli groups" that promote hatred against settlements in Israel and Europe. In January 2015, he became involved in an international incident between the U.S State Department and Israel. In January 2015, Jewish settlers at the Adei Adillegal outpost threw stones at diplomats from a U.S. delegation who had arrived to inspect vandalism reported at a grove of Palestinian-owned trees in the occupied West Bank. It was reported that recently, settlers were suspected of uprooting thousands of olive tree saplings, some of which had been planted in honor of senior Palestinian official Ziad Abu Ein, who collapsed and died after an altercation with an Israeli soldier. The American consulate came to inspect the grove because some of the land owners claim U.S. citizenship. No injuries were reported. A U.S. State Department spokesman, Jeff Rathke, said, "We can confirm a vehicle from the Consulate General was pelted with stones and confronted by a group of armed settlers today in the West Bank, near the Palestinian village of Turmus Ayya." He added that the U.S. is "deeply concerned" about the attack, and that the Israeli authorities recognize "the seriousness of the incident". A police spokeswoman said the police were investigating the incident, and no arrests had been made. The U.S. State Department has offered the Israeli authorities a videotape of the incident showing no American drew weapons. Yossi Dagan, in his role as Head of the Shomron Regional Council, urged Interior MinisterGilad Erdan to expel the American delegation, claiming they were spies.
Protest outside Prime Minister's residence
In the end of October 2017 Yossi Dagan, Head of Shomron Regional Council led a three week long protest outside of the Prime Minister's Residence in Jerusalem. The protesters demanded that the government approve with no delay funding to improve roads and security for the settlements in the region. During the last week they declared a hunger strike. On Friday Nov. 9, the group held a press conference on site together with MK David Bitan who represented PM Netanyahu in negotiations, they announced that their demands were accepted and that the PM had signed a letter to the effect.
Through cooperation and protection of the IDF command The Shomron Regional Council organizes periodic visits and events at Joseph's Tomb in Nablus Shechem which in Area A under the full control of the Palestinian Authority. This area is normally of limits to Israeli and Jewish people. On such a visit in December 2017 the site was found vandalized, something that has occurred repeatedly under the PA. Yossi Dagan called on the government of Israel to retake and protect the Jewish holy place.