Les commentaires ésotériques du Coran selon ‘Abd al-Razzâq al-Qâshânî, Paris, Les Deux Océans, 1980, revised and extended in 1991, 123 pages. Translation inton turkish by Sadık Kılıc, Kaşânî’ye Göre Kur’an’ın Tasavvufi Tefsiri, Istanbul, Insan yayınları, 2001. Translation into Persian by Zaynab Poudineh Aqaï, Ta’wîlât al-Qur’ân az dîdgâh-e ‘Abd al-Razzâq-e Kâshânî, Téhéran, Enteshârât-e Hekmat, 2004.
Dix traités d’alchimie de Jâbir ibn Hayyân - Les dix premiers Traités du Livre des Soixante-dix, Paris, Sindbad, 1983, reissued with an update in 1996, éditions Actes-Sud, 313 pages.
L’élaboration de l’Elixir Suprême - Quatorze traités de Jâbir ibn Hayyân sur le Grand Œuvre alchimique, Damas, Publications of the Institut Français d’Études Arabes, 1988.
Alchimie et mystique en terre d’Islam, Lagrasse, Verdier, Collection "Islam spirituel", 1989. Reprinted by éditions Gallimard, folio/essais, 2003, 246 pages. Translated into Spanish by Gracia Lopez Anguita, Alquimia y mística en el Islam, Madrid, Mandala Ediciones, 2005 ; into persian by Zeinab Pudineh Aqai et Reza Kuhkan, Kîmyâ-o ‘erfân dar sarzamîn-e Eslâm, Enteshârât-e Tahûrî, 2009.
Le rêve et ses interprétations en Islam, Paris, Albin Michel, collection "Science des religions", 2003, 320 pages. Translation into Arabic Ta‘bîr al-ru’yâ fî al-Islâm, by Dalyâ al-Tûkhî, Cairo, al-Hay’a al-Misryya al-‘Âmma li-al-Kitâb, 2007.
La science des lettres en islam, Paris, Dervy, Esprit de Lettre, 2004, 146 pages. Translation into Arabic by Dâliâ al-Tûkhî, ʿilm al-Ḥurouf fî al-Islâm, Cairo, Al-hay’a al-misriyya al-‘âmma li-al-kitâb, 2006.
Articles by Pierre Lory in encyclopedies and dictionaries
Articles "Sarrâdj", "Shâdhilî", "Shâdhiliyya", "Shahrazûrî", "Tarîka " ; "Walî ", "Wukûf", "Muhammad b. Ahmad al-Hudîgî", "Tayyibiyya" in Encyclopédie de l’Islam 2e éd., Leiden, Brill.
Coordination du secteur "Islam" of the Dictionnaire critique de l’ésotérisme, Presses Universitaires de France, 1998, and writing of the articles "Alchimie", "Bastâmî", "orsî", "Danse", "Hallâj", "Ibn Masarra", "Islam", "Jâbir ibn Hayyân", "Magie", "Sabtî" in this volume.
Articles "Jâbir ibn Hayyân" and "Râzî " in Encyclopédie Philosophique Universelle - Les œuvres philosophiques', Presses Universitaires de France, 1992.
"Hermetik – Hermetica / Islam", in Religion in Geschichte und Gegenwart – 4th completely revised edition, edited by H. D. Betz, D. S. Browning, B. Janowski and E. Jüngel, Mohr Siebeck, Tübingen, 2000.
"Hermetic Literature III : Arab", in Dictionnary of Gnosis and Western Esotericism, W. J. Hanegraaf, A.Faivre, R. van den Broek and J.-P. Brach éds, Leiden, Brill, 2005.
Article "Jâber ebn-e Hayyân in Dâneshnâme-ye jahân-e Eslâm, vol. 9, Téhéran, Encyclopaedia Islamica Foundation 2005.
Articles "Aaron", "Abraham", "David", "Elie", "Exégèse mystique", "Ezéchiel", "Folie", "‘Imrân et sa famille"", "Isaac et Ismaël", "Jean-Baptiste", "Josué", "Judas Iscariote", "Madian", "Magie", "Martyre", "Moïsz", "Nemrod"", "Occident et Coran", "Pèlerinage à La Mecque", "Poésie", "Qârûn", "Rêves", "Sciences occultes", "Zacharie" in the Dictionnaire du Coran, ss. dir. M. A. Amir-Moezzi, Laffont, 2007.
Article "‘Abd al-Razzâq al-Kâshânî", "'Abd al-'Azîz al-Dabbâgh" in The Encyclopaedia of Islam, 3rd edition, 2009, Leiden, Brill.