Within the Ryukyu Kingdom, territory was divided into magiri, which in turn were divided into shima. A magiri was comparable to a Japanese prefecture while shima were individual villages. There were about 800 shima in the Ryukyu Kingdom. Linguists Seizen Nakasone and Satoshi Nishioka have proposed that each shima developed their own distinct dialects or accents due to people very rarely traveling outside of their shima. At high level, linguists mostly agree to make the north–south division. In this framework, Northern Ryukyuan covers the Amami Islands, Kagoshima Prefecture and the Okinawa Islands, Okinawa Prefecture. The subdivision of Northern Ryukyuan, however, remains a matter of scholarly debate. In the Okinawa-go jiten, Uemura Yukio simply left its subgroups flat:
Several others have attempted to create intermediate groups. One of two major hypotheses divides Northern Ryukyuan into Amami and Okinawan, drawing a boundary between Amami's Yoron Island and Okinawa Island. The same boundary was also set by early studies including Nakasone and Hirayama. Nakamoto offered a detailed argument for it. He proposed the following classification.
Northern Ryukyuan dialect
*Amami dialect
**Northern Amami
**Southern Amami
*Okinawan dialect
**Northern Okinawan
**Southern Okinawan
The other hypothesis, the three-subdivision hypothesis, is proposed by Uemura. He first presented a flatlist of dialects and then discussed possible groupings, one of which is as follows:
Amami–Okinawan dialect group
*Ōshima–Tokunoshima group
**Ōshima
**Tokunoshima
*Okinoerabu–Northern Okinawan group
**Okinoerabu
**Northern Okinawan
*South–Central Okinawan dialects
The difference between the two hypotheses is whether Southern Amami and Northern Okinawan form a cluster. Thorpe presented a "tentative" classification similar to Uemura's:
Karimata investigated Southern Amami in detail and found inconsistency among isoglosses. Nevertheless, he favored the three-subdivision hypothesis:
Amami–Okinawan dialect group
*Amami–Tokunoshima dialects
*Okinoerabu–Yoron–Northern Okinawan dialects
*South–Central Okinawan dialects
Karimata 's proposal is based mostly on phonetic grounds. Standard Japanese/e/ corresponds to /ɨ/ in Northern Amami while it was merged into /i/ in Southern Amami and Okinawan.
Word-initial changed to before certain vowels in Southern Amami and several Northern Okinawan dialects while Northern Amami has. The boundary between Northern and Southern Amami is clear while Southern Amami and Northern Okinawan have no clear isogloss. The pan-Japonic shift of can be observed at various stages in Amami–Okinawan. Unlike Northern Amami and Southern Okinawan, Southern Amami and Northern Okinawan tend to maintain labiality, though the degree of preservation varies considerably. These shared features appear to support the three-subdivision hypothesis. However, Karimata also pointed out several features that group Northern and Southern Amami together. In Amami, word-medial changed to /h/ or even dropped entirely when it was surrounded by /a/, /e/ or /o/. This can rarely be observed in Okinawan dialects. Japanese corresponds to in Amami and in Okinawan. Uemura also argued that if the purpose of classification was not of phylogeny, the two-subdivision hypothesis of Amami and Okinawan was also acceptable. Pellard took a computational approach to the classification problem. His phylogenetic inference was based on phonological and lexical traits. The results dismissed the three-subdivision hypothesis and re-evaluated the two-subdivision hypothesis although the internal classification of Amami is substantially different from conventional ones. The renewed classification is adoptedin Heinrich et al.. The membership of Kikai Island remains highly controversial. The northern three communities of Kikai Island share the seven-vowel system with Amami Ōshima and Tokunoshima while the rest is grouped with Okinoerabu and Yoron for their five-vowel systems. For this reason, Nakamoto subdivided Kikai:
Based on other evidence, however, Karimata tentatively grouped Kikai dialects together. Lawrence argued that lexical evidence supported the Kikai cluster although he refrained from determining its phylogenetic relationship with other Amami dialects. As of 2014, Ethnologue presents another two-subdivision hypothesis: it groups Southern Amami, Northern Okinawa and Southern Okinawa to form Southern Amami–Okinawan, which is contrasted with Northern Amami–Okinawan. It also identifies Kikai as Northern Amami–Okinawan. Heinrich et al. refers to the subdivisions of Northern Ryukyuan as only "Amami" and "Okinawan". There is a note that other languages, specifically within the Yaeyama language, should be recognized as independent due to mutual unintelligibility.