In April 1995, the Montrealer was shifted to daytime operation, cut back to St. Albans, and renamed as the Vermonter, providing daytime service to eastern and central Vermont for the first time since 1966. The western part of the state then advocated for rail service to Rutland as well. $4.7 million in federal funds was secured to upgrade the former Delaware and Hudson Railway Whitehall Branch between Whitehall and Rutland for passenger speeds. Service was initiated on December 2, 1996. This was the first passenger service to Rutland since the Rutland Railroad ended its Burlington–New York City service in 1953, and the first passenger service on the Whitehall Branch since 1936. The Ethan Allen Express began with stops in,,,,,,,,, and. A stop at Fair Haven was added in November 1997. Until May 2002, the train included a baggage car for skis and unboxed bicycles as well as checked baggage. In October 2008, the Vermont Agency of Transportation proposed eliminating the Ethan Allen Express and replacing it with a bus citing budgetary restrictions. The proposal was rejected by a legislative committee. VTrans again proposed ending service in January 2009; two hundred people rallied at Rutland station against the proposed cut. Rail advocates, led by the Vermont Rail Action Network and local political leaders organized to fight the cut and plans to drop the service were abandoned. On January 2, 2010, the Ethan Allen Express began stopping at. Service to Fair Haven ended on January 9. On February 23, 2011, VTrans began an investigation into the Vermont Rail System's handling of the Ethan Allen Express between Whitehall, New York and Rutland after Amtrak notified the state that track conditions meant the train was frequently delayed. Amtrak evaluated the line as the worst in the nation. During the summer of 2011, VRS conducted work to improve the track in question, planned to result in an eighteen-minute reduction in travel time by the end of the year, with additional work planned for the summer of 2012. The project was funded by both the railroad and the state of New York at a cost of $3.25 million, and involved rebuilding about of track and eight grade crossings. By February 2012, the trackwork had resulted in a 15-minute southbound and 25-minute northbound reduction in travel time between Rutland and Whitehall, while the total time the Ethan Allen Express operated behind schedule fell to 135 minutes in December 2011, from 11,068 minutes a year earlier. All trains using the Empire Connection, excluding the Lake Shore Limited operated into Grand Central Terminal from May 26, to September 4, 2018 to allow work on the Empire Tunnel, the Spuyten Duyvil movable bridge, and Track 19 in New York's Penn Station. In April 2020, Ethan Allen Express service north of Albany–Rensselaer was suspended indefinitely as part of a round of service reduction in response to the ongoing coronavirus pandemic.
There have been plans to extend the Ethan Allen from Rutland to Burlington since at least 2000. The last passenger service between the cities was in 1953 on the Rutland Railroad's Green Mountain Flyer and Mount Royal. In 2005, a $30 million earmark was obtained by Senator Jim Jeffords to, in part, fund the extension. Of this, $19 million remained by 2011, the balance having been used for other projects such as a new spur for freight traffic. Advocates, led by chambers of commerce and the Vermont Rail Action Network, renewed the push for an extension to Burlington. They believed that service to Burlington would secure the long-term sustainability of the service by generating much more ridership than Rutland is capable of. The Vermont Agency of Transportation applied for American Recovery and Reinvestment Act of 2009 funds to rebuild the tracks between Rutland and Burlington to passenger standards. While the initial application was not approved, the state subsequently entered a second US$70 million application for similar grants, and later a third, all of which were rejected. In 2013, the extension received additional funding via a $9 million grant from the fifth round of the Transportation Investment Generating Economic Recovery program to pay for the replacement of jointed rail with continuously welded rail. In October 2015, the Vermont Agency of Transportation was awarded a $10 million TIGER 2015 grant to rehabilitate 11 miles of track, add a wye in Rutland, add crossovers and passing sidings, and install passenger platforms in Middlebury, Vergennes, and Burlington. These improvements will result in increased speeds of up to for freight and for passenger trains between Rutland and Burlington. In October 2015, VTrans said that service to Burlington would begin in three to four years. Service is currently expected to start in 2021. When it starts, it is anticipated that the train will arrive in Burlington in the evening and depart in the morning. Middlebury has hired a consultant to study locations for its station, while Burlington hired a consultant to study where the train should be parked overnight. The train storage issue has been resolved with the decision to store trains overnight to the south of the station. The trains will be stored in the Vermont Rail System yard.
Route details
The Ethan Allen Express operates over trackage owned by the following railroads:
Clarendon & Pittsford Railroad: Rutland, Vermont–Whitehall, New York
Canadian Pacific Railway: Whitehall–Schenectady, New York
CSX Transportation : Schenectady–Poughkeepsie, New York