Chloroflexi (class)


The Chloroflexia are one of six classes of bacteria in the phylum Chloroflexi, known as filamentous green non-sulfur bacteria. They use light for energy and are named for their green pigment, usually found in photosynthetic bodies called chlorosomes.
Chloroflexia are typically filamentous, and can move about through bacterial gliding. They are facultatively aerobic, but do not produce oxygen in the process of producing energy from light, or phototrophy. Additionally, Chloroflexia have a different method of phototrophy than true photosynthetic bacteria.

Etymology

The name "Chloroflexi" is a Neolatin plural of "Chloroflexus", which is the name of the first genus described. The noun is a combination of the Greek chloros meaning "greenish-yellow" and the Latin flexus meaning "bent" to mean "a green bending". The name is not due to chlorine, an element confirmed as such in 1810 by Sir Humphry Davy and named after its pale green colour.

Taxonomy and molecular signatures

The Chloroflexia class is a group of deep branching photosynthetic bacteria that currently consist of three orders: Chloroflexales, Herpetosiphonales, and Kallotenuales. The Herpetosiphonales and Kallotenuales each consist of a single genus within its own family, Herpetosiphonaceae and Kallotenuaceae, respectively, whereas the Chloroflexales are more phylogenetically diverse.

Microscopic distinguishing characteristics

Members of the phylum Chloroflexi are monoderms and stain mostly Gram negative, whereas most bacteria species are diderms and stain Gram negative, with the Gram positive exceptions of the Firmicutes, Actinobacteria, and the Deinococcus-Thermus group.

Genetic distinguishing characteristics

Comparative genomic analysis has recently refined the taxonomy of the class Chloroflexia, dividing the Chloroflexales into the suborder Chloroflexineae consisting of the families Oscillachloridaceae and Chloroflexaceae, and the suborder Roseiflexineae containing family Roseiflexaceae. The revised taxonomy was based on the identification of a number of conserved signature indels which serve as highly reliable molecular markers of shared ancestry.

Physiological distinguishing characteristics

Additional support for the division of the Chloroflexales into two suborders is the observed differences in physiological characteristics where each suborder is characterized by distinct carotenoids, quinones, and fatty acid profiles that are consistently absent in the other suborder.
In addition to demarcating taxonomic ranks, CSIs may play a role in the unique characteristics of members within the clade: In particular, a four-amino-acid insert in the protein pyruvate flavodoxin/ferredoxin oxidoreductase, a protein which plays important roles in photosynthetic organisms, has been found exclusively among all members in the genus Chloroflexus, and is thought to play an important functional role.
Additional work has been done using CSIs to demarcate the phylogenetic position of Chloroflexia relative to neighbouring photosynthetic groups such as the Cyanobacteria.
Chloroflexia species form a distinct lineage with Chlorobi species, their closest phylogenetic relatives. A CSI has been found to be shared among both Chloroflexia and Chlorobi members, which has been interpreted as the result of a horizontal gene transfer event between the two relatives.

Taxonomy

The currently accepted taxonomy is as follows:
Additionally, "Kouleothrix aurantiaca" and "Dehalobium chlorocoercia" have not been fully described.